Book: A Crack In Creation by Jennifer A. Doudna and Samuel H. Sternberg

See how the letters in yellow are all DNA-related?
Adenine, cytosine, guanine, and thymine. (Like in the movie GATTACA.)

Book: A Crack In Creation: Gene Editing and the Unthinkable Power to Control Evolution
by Jennifer A. Doudna and Samuel H. Sternberg
published by Mariner Books / Houghton Mifflin Harcourt, New York
2017

Imagine not only having the scientific skills to be recognized with a Nobel Prize, but also the communication ability to explain the scientific landscape context in which you did it, AND the basics of the science? You don’t have to just imagine it: you can read this book!

Doudna and Sternberg describe this important technology well. My own limited summary of what they’ve proven would be: bacterial chromosomes store DNA snippets of viruses they encounter, which they use to mount a precise defense against viruses; the way they store the information is so consistent that it works like a programming language; and these precision DNA-targeting defenses are useful for scientists to make precise modifications to DNA.

This impressive book describes past and current developments in genetic editing, tools and approaches (including Zinc Finger Nucleases and Transcription Activator-Like Effector Nucleases), what other scientists were discovering, and Doudna’s work with many collaborators on developing CRISPR Cas9 into a useful tool for human scientists. I appreciate the authors’ work in identifying and crediting other actors in this space, and how the collective contributions to overall knowledge supported further discoveries.

Doudna and Sternberg write clearly about very complex topics, and do a great job of covering this technology at a high enough level that non-biochemist readers can grasp the general concepts without needing to fully understand the mechanics of it all. (There were times when they were working on one problem, and tested it by developing a tool that seemed just as hard as the problem they were trying to address, which both impressed and surprised me, catching me up further to the current state of what is possible. )

The book continues beyond the science of how CRISPR Cas9 works into the ethical implications of being able to impact our own evolution, which is a discussion Doudna is actively promoting. The book suggests that the scientific community’s expanding knowledge of genetic disorders appears to be pointing toward good, single-mutation candidates for potential therapeutic treatments in humans, but that more complex conditions would require other solutions, and that we need much more data – and some difficult ethical conversations – to determine whether to change human genes in an inheritable way.

I did object to a few positions in the book which speculated on using technology to favor business interests over consumer demands, the environment, and animal welfare. These positions may attract investment from “Big Ag” while turning off the public.
Doudna compares CRISPR to Big Ag’s Genetically Modified Organism campaigns, and blames consumers for not embracing the self-serving objectives of Ag corporations. The industry modifications were intended to consolidate business, not benefit consumers or meet any specific consumer demand. Consumers should not be expected to embrace products which do not directly benefit them. Various national laws, including those in the EU and India, have recognized that GMO use is not a purely scientific matter, but one of industry consolidation and domination, and one which has environmental impacts.
While the UN Climate organizations are advising us to dramatically reduce animal agriculture, the authors here see engineering animals to eat more favorably than our global crisis or public health require.
The concept of animal welfare is raised but not meaningfully addressed, or is addressed in an industry-over-animals point of view. (Writing on animal welfare should NOT make me think of internet jokes about inert monsters produced for fast food chains!)

CRISPR Cas9 has vast potential as a tool to improve human health in the area of genetic diseases – what a time to be alive! – and the complex process of determining appropriate priorities and ethical frames for this important work still lie ahead. This is a clear, thoughtful, informative book for learning more about this technology and the ethical concerns this technology creates.

Pandemic Life: Humans are Strange

The biggest news today is that the Food and Drug Administration officially FULLY approved the Pfizer COVID-19 vaccine for adult use against COVID, which is a big deal. It doesn’t change our access to it here in the U.S., it just shows people who claimed their reluctance was based on the vaccine’s lack of full approval that their concerns have been alleviated. If that was their actual concern.

Meanwhile, the same FDA had to say this.

Somehow, American adults who don’t trust the vaccine specifically to protect humans against COVID do trust a livestock deworming medication which is neither for humans nor for COVID.

I do not understand this.

Old person story: Kids used to try to persuade their parents to let them do something because all of their friends were doing it, and parents used to reply by asking if they would jump off a bridge if their friends did it, which was supposed to make a point about blind conformity… but… now I suspect some of those kids could counter with, “Like the time you took horse de-worming medication to treat an unrelated illness because of something you read on Facebook? “ Which would make their parents go quiet.

The World Health Organization has been compiling the wacky things people think, to correct their strange confusion. Their myth-busting page is here:

My favorite, because it is about tasty food, is:

FACT: Peppers are tasty!

Stamps: Sun Science

These are gorgeous and science-y and geeky all at the same time.

The US Postal Service has released images of the sun in different wavelengths of light, which you can buy online or at your local post office. They are SUPERB.

(You were expecting me to write about the Star Wars Droid stamps, but I won’t indulge you. Ha!)

Book: The Immortal Life of Henrietta Lacks by Rebecca Skloot

The Immortal Life of Henrietta Lacks
by Rebecca Skloot
published by Crown; audiobook published by Penguin Random House
2010

OH MY GOODNESS, THIS BOOK. This book is several books in one. At least.

This is a book about the dawn of cell culture, and the scientific beginnings of being able to keep human cells alive outside the body. This ties directly to the biotechnology industry I work in, and provides a history of early techniques and advances that I didn’t know I needed to know!

This is a book about the lives of American Blacks in or from the 1950s American South, the struggles of people too poor to leave the lands on which their ancestors were slaves, the burdens on women who lived with older male cousins who molested them, and the social hierarchies that followed those who left to the north, where no one questioned doctors. (I have never been more grateful that my Black ancestors fled to the midwest… Thank you, grandma!)

(Please note that I am bi-racial, and my family uses Black more than African-American in our self-descriptions; you’ll see me switch between these terms, and sometimes switch cases (Black or black) in my writing.)

This is also a book about remarkable scientific advances that occurred in during an ethically horrific era, in which studies were performed on people, especially African-Americans and institutionalized people, without their consent.

And of a highly ethical, profoundly curious, deeply committed biologist who wanted to know where HeLa cells REALLY came from, and worked for years with the family of Henrietta Lacks to learn the human story behind the cells.

This book is an emotional roller coaster! From scientific research challenges, to scientists sharing technology freely, to religious Lacks family members who feared their relative was being cloned and that her soul would never rest, to disabled children suffering through medical experiments their families didn’t consent to, to temperamental collaborators, this isn’t the story I was expecting, but it was a remarkable tale, and the audio books was produced to be an amazing ‘listen.’

I recommend this book highly for anyone interested in cell culture, biotechnology, genetic rights, the horrors of mental institutions for the poor, informed consent, being black in the 1950s in the US, and science sleuthing! Sloot does an amazing job of telling the story of writing the book within the book, which is a true adventure. What an author! What a researcher!

News: Johns Hopkins Vaccine News Hub

There is now enough good vaccine news that Johns Hopkins has a page devoted to these developments.

Here in the U.S., the vaccines I’m reading about daily and which give me encouragement are made by: (a) Pfizer and BioNTech, (b) Moderna, and (c) AstraZeneca and Oxford University.

Vaccines in Russia and China are also ‘in play,’ which is hugely beneficial for the world, since as many nations as possible need to contribute solutions and ensure they are available globally.

Internet Rabbit Hole: Caffeine toxicology… in frogs

Long story, short: someone was assaulted with a hot cup of coffee yesterday, and I wound up discussing the impacts of caffeine on the skin.

Caffeine CAN be absorbed through the skin (which was a running joke in the Sylvia comic strip by Nicole Hollander, in which the protagonist started developing elaborate wardrobes for her cats after using caffeinated soap, and the cats begged her to stop), and is a fashionable item in cosmetics (it constricts blood vessels, and so can reduce some types of swelling).

But somehow, I wound up reading that caffeine is also a highly effective pesticide against invasive species of frogs in Hawaii. This makes some sense to me, based on my limited understanding of amphibians and their sensitive, not-especially-protective skin.

Art/Science: Citrus Botanical Illustrations

This is a reminder that many citrus fruit used to have insanely thick peels, the way some pomelos do:

An early-modern ode to citrus fruit – in pictures

Johann Christoph Volkamer was a 17th -century Nuremberg silk merchant with passion for gardening that defined his life. He was obsessed with citrus fruit at a time when the genus was largely unknown in northern Europe. In 1708, he commissioned 256 plates of 170 varieties of the fruit – images collected in a new book by Prof Iris Lauterbach called JC Volkamer.

Art/Science: Marianne North’s botanical paintings

Details from the Kew Gardens postcard box collection of Marianne North’s work. I’m delighted to have come across this, and know I’ll need to keep some of these for myself, though my pen friends will enjoy all the others!

If you’ve read any of my prior blogs, you know I love scientific illustrations, both by hand and with photographs, especially for botany. I’m delighted to now have a Kew Gardens (UK) postcard box dedicated to Marianne North’s botanical oil paintings.

Kew has a collection of more than 800 of her oil paintings, which were not only attractive, but also novel for her time: they were painted in oil paints, when the convention was watercolor; and they were painted with details of their native environment, not just on a white background. North had been impressed by Kew’s plant collection, and wanted to go to where those plants came from, to study them in the field. Though her father had died and she was unmarried, she was wealthy enough to ignore conventions requiring her to travel under a male relative’s supervision, and set off at age 40 to explore 15 countries over 14 years.

I love that she painted a pitcher plant that had not previously been documented by Europeans, which excited the botanists, who worked her name into the formal species name. (I always have an issue with Europeans naming things outside of Europe after themselves, rather than getting input from local people IN that region, but in this instance I’m consoled that they at least named it after a female artist who called their attention to it.)

Marianne North Gallery

More than 800 remarkable paintings cover the walls of the Marianne North Gallery. A vivid collection of 19th century botanical art, the gallery is a treat for both art lovers and adventurous minds. As a woman who defied convention, North travelled the world solo to record the tropical and exotic plants that captivated her.

I like her work; I like her convictions about including the natural settings, which themselves convey a great deal of information; and I am impressed that she could do so much in oil paint, which I think of as requiring more time (to dry especially) and requiring much heavier supplies (and solvents!). I like that Julia Margaret Cameron photographed her in Sri Lanka. (I hadn’t known that JMC even WENT to Sri Lanka…)

Kew’s collection isn’t an accident: North not only gave it to them, she paid for, designed, and staged the building her collection resides in. She could afford to share her work and love of plants on a rather grand scale, and she did.

I’m enjoying her work (I love many of the plants she loved), and love the quality of the postcard collection, which will allow me to ply my friends with her art.

Book: Earth: Bernhard Edmaier Colors of the Earth

Gorgeous cover of the gorgeous through and through book by Bernhard Edmaier

Earth: Bernhard Edmaier Colors of the Earth
by Bernhard Edmaier
published by Phaidon
2013

Edmaier’s aerial photography work is justifiably famous; Phaidon is my favorite photography book publisher; this oversized photography book combining what I appreciate about each is a fantastic work, especially for those of you who enjoy geology.

This book is FULL of geology. Geology which is composed beautifully and makes me think of the abstract paintings I am so fond of.

This isn’t JUST a book of beautiful photography which happens to be organized by color: it is also filled with scientific explanations for the colors and forms in the images. I hereby give a special shout out to iron oxide, for all the magic it does around the world!

Before you ask: OF COURSE there are images of volcanoes, volcanic cones, and LAVA. And oceans, and coral reefs, and icebergs that have just turned over and are glassy and clear, and glowing blue pools of meltwater, and…

One of countless remarkable images of the natural world, so skillfully captured by Edmaier.

You’ll learn something new about how crystals or mountains formed; you’ll want to fly to remote islands and volcanoes to see their remarkable textures; you’ll have a new appreciation for all the colors a glacier can feature. My tiny, low-resolution teaser images won’t do this heavy, beautifully produced book justice, but I can say that I recommend it with great zeal.

You likely could have guessed this, but Bernhard Edmaier has a fantastic website, which reveals that he did study geology, and which features other books of his, some of which I don’t yet own. (Oh-oh.)

Enjoy the beauty of the natural world, and especially its geology, through the work of this talented photographer.

Science: Local COVID-19 Research

As scientific and medical teams around the world race to find preventions, treatments, and cures for SARS-CoV-2, I did get excited by this extremely novel research that is being done at my own local university / hospital, UCSF. It needs to be tested, of course, but it’s exciting to read about such a different approach.

‘AeroNabs’ Promise Powerful, Inhalable Protection Against COVID-19

As the world awaits vaccines to bring the COVID-19 pandemic under control, UC San Francisco scientists have devised a novel approach to halting the spread of SARS-CoV-2, the virus that causes the disease. Led by UCSF graduate student Michael Schoof, a team of researchers engineered a completely synthetic, production-ready molecule that straitjackets the crucial SARS-CoV-2 machinery that allows the virus to infect our cells.

The idea that llamas, camels, and other animals have completely different ways of managing their immune systems reminds me of my past concerns about the idea of engineering animals to produce medicines in their bodies for us to extract. That always felt entirely too risky, because we lack a deep understanding of their diseases. When you think of big pandemics, you’ll see why I say this: bird flu! swine flu! chicken pox! See the pattern? Zoonotic diseases, including our current global pandemic, are a serious global human health concern, so playing around with animal tissues without understanding that has always seemed unwise.

It seems like the research highlighted in this article can improve our understanding of animal immune systems in addition to potentially understanding zoonotic diseases, which should be beneficial. The new treatment also wouldn’t require needles, as any new vaccine may have supply chain problems for delivery into the patient, based on current information. Yaay, pursuit of knowledge!